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Dr. Jean Fan

@JEFworks • 8,850 subscribers

Associate prof comp biologist @JHUBME. Founder @cuSTEMized. Editor @PLOSCompBiol. Alum @HarvardDBMI @blairmagnet. Doing art like a science, science like an art.

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Just finished teaching another semester of genomic #datavisualization 🥳 Discover the awesome #dataviz made by students in the class for various #singlecell #spatialtranscriptomics data Check out the course notes + #Rstats code to explore for yourself:

Just finished teaching another semester of genomic #datavisualization 🥳 Discover the awesome #dataviz made by students in the class for various #singlecell #spatialtranscriptomics data Check out the course notes + #Rstats code to explore for yourself:

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Thick-tissue spatial transcriptomics w/ 3DEEP-HybISS in skin enabled pseudotemporal molecular mapping of hair follicle organogenesis via asynchrony of follicle development: Explore the data for urself: Congrats to Reza Kalhor +team
0:26
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Thick-tissue spatial transcriptomics w/ 3DEEP-HybISS in skin enabled pseudotemporal molecular mapping of hair follicle organogenesis via asynchrony of follicle development: Explore the data for urself: Congrats to Reza Kalhor +team

Dr. Jean Fan

12,503 views • 25 days ago

Thanks to the authors for sharing all components of this mouse embryo spatial transcriptomics data from cell gene counts to per-molecule coordinates: 🥳 So I vibe coded an app to explore the 3D subcellular transcript organization:
0:20
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Thanks to the authors for sharing all components of this mouse embryo spatial transcriptomics data from cell gene counts to per-molecule coordinates: 🥳 So I vibe coded an app to explore the 3D subcellular transcript organization:

Dr. Jean Fan

50,567 views • 6 months ago

Inspired by some gesture-based point cloud controllers I've seen on here, I vibe coded a similar web app to explore the relationship between spatial, UMAP, and PCA embeddings for spatial transcriptomics data. Next level interactivity via🖐️ Try it out:
0:42
JEFworks's profile picture

Inspired by some gesture-based point cloud controllers I've seen on here, I vibe coded a similar web app to explore the relationship between spatial, UMAP, and PCA embeddings for spatial transcriptomics data. Next level interactivity via🖐️ Try it out:

Dr. Jean Fan

17,649 views • 6 months ago

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