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Kexin Huang

@KexinHuang5 • 6,577 subscribers

Co-founder & CEO @phylo_bio. ex-Stanford CS PhD. Building AI for biologists.

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Biomni Lab lets biologists collaborate with AI agents to finish complex tasks end-to-end. Here are 15 popular use cases, each link is a full replay so you can watch the agent work through every step: 1. Spatial transcriptomics analysis: map gene expression across tissue architecture from spatial transcriptomics data, with spatial clustering and neighborhood analysis. 2. Binder design: design de novo protein binders against a target structure using computational protein design tools. 3. Biomarker panel design: identify and optimize a multi-marker diagnostic or prognostic panel from omics data. 4. Clinical trial landscaping: search and summarize the trial landscape for a disease area, mapping phase, endpoints, and sponsor activity. 5. Survival analysis: pull clinical and expression data, fit Cox models, generate Kaplan-Meier curves, and identify prognostic markers. 6. scRNA-seq processing and annotation: from raw counts to UMAP clustering, marker gene detection, and automated cell type labeling. 7. Cell-cell communication: infer ligand-receptor interactions between cell types from single-cell data and map intercellular signaling networks. 8. Primer design for novel Cas13: analyze a putative Cas13 protein from a metagenomic screen—verify the ORF, identify HEPN domains, and design cloning primers with restriction sites and a FLAG 9. Proteomics differential expression: normalize mass spec data, run statistical tests, and visualize differentially abundant proteins. 10. Gene regulatory network inference: reconstruct transcription factor-target gene networks from expression data and identify key regulators. 11. Gene co-expression network analysis: build weighted co-expression networks, identify gene modules, and correlate them with phenotypic traits. 12. Microbiome analysis: process 16S/metagenomic sequencing data to profile microbial communities, diversity, and differential abundance. 13. Polygenic risk scores: compute and evaluate PRS from GWAS summary statistics against a target cohort. 14. Variant annotation: annotate genetic variants with functional predictions, allele frequencies, and clinical significance. 15. Fine-mapping: narrow GWAS loci to credible causal variants using statistical fine-mapping methods. Each of these would normally take days to weeks of scripting, debugging, and iteration. In Biomni Lab, the agent handles the full execution while you steer the science. Learn more:

Biomni Lab lets biologists collaborate with AI agents to finish complex tasks end-to-end. Here are 15 popular use cases, each link is a full replay so you can watch the agent work through every step: 1. Spatial transcriptomics analysis: map gene expression across tissue architecture from spatial transcriptomics data, with spatial clustering and neighborhood analysis. 2. Binder design: design de novo protein binders against a target structure using computational protein design tools. 3. Biomarker panel design: identify and optimize a multi-marker diagnostic or prognostic panel from omics data. 4. Clinical trial landscaping: search and summarize the trial landscape for a disease area, mapping phase, endpoints, and sponsor activity. 5. Survival analysis: pull clinical and expression data, fit Cox models, generate Kaplan-Meier curves, and identify prognostic markers. 6. scRNA-seq processing and annotation: from raw counts to UMAP clustering, marker gene detection, and automated cell type labeling. 7. Cell-cell communication: infer ligand-receptor interactions between cell types from single-cell data and map intercellular signaling networks. 8. Primer design for novel Cas13: analyze a putative Cas13 protein from a metagenomic screen—verify the ORF, identify HEPN domains, and design cloning primers with restriction sites and a FLAG 9. Proteomics differential expression: normalize mass spec data, run statistical tests, and visualize differentially abundant proteins. 10. Gene regulatory network inference: reconstruct transcription factor-target gene networks from expression data and identify key regulators. 11. Gene co-expression network analysis: build weighted co-expression networks, identify gene modules, and correlate them with phenotypic traits. 12. Microbiome analysis: process 16S/metagenomic sequencing data to profile microbial communities, diversity, and differential abundance. 13. Polygenic risk scores: compute and evaluate PRS from GWAS summary statistics against a target cohort. 14. Variant annotation: annotate genetic variants with functional predictions, allele frequencies, and clinical significance. 15. Fine-mapping: narrow GWAS loci to credible causal variants using statistical fine-mapping methods. Each of these would normally take days to weeks of scripting, debugging, and iteration. In Biomni Lab, the agent handles the full execution while you steer the science. Learn more:

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🧪Announcing Biomni × PyLabRobot — a step toward an AI biologist that can think, design, and execute wet-lab experiments end-to-end. See Biomni in action below 👇 Super fun collab with Retro Biosciences Rick Wierenga serena! Learn more:

🧪Announcing Biomni × PyLabRobot — a step toward an AI biologist that can think, design, and execute wet-lab experiments end-to-end. See Biomni in action below 👇 Super fun collab with Retro Biosciences Rick Wierenga serena! Learn more:

21,932 次观看

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🧬 Excited to open-source Biomni! With just a few lines of code, you can now automate biomedical research with AI agent! We are releasing Biomni A1 (agent) + E1 (env) with 150 specialized tools, 59 databases, and 105 software. E1 is our first attempt at curating the bio-agent environment, but it only scratches the surface: Call to help build Biomni-E2 - an open environment for bio-agent, built with and for the community! We welcome new tools, benchmarks, datasets, agents, and beyond to build the environment together. Significant contributors will be invited as co-authors on our upcoming E2 manuscript. More to come! 💻 🌐 Biomni
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🧬 Excited to open-source Biomni! With just a few lines of code, you can now automate biomedical research with AI agent! We are releasing Biomni A1 (agent) + E1 (env) with 150 specialized tools, 59 databases, and 105 software. E1 is our first attempt at curating the bio-agent environment, but it only scratches the surface: Call to help build Biomni-E2 - an open environment for bio-agent, built with and for the community! We welcome new tools, benchmarks, datasets, agents, and beyond to build the environment together. Significant contributors will be invited as co-authors on our upcoming E2 manuscript. More to come! 💻 🌐 Biomni

Kexin Huang

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