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Introducing AI Click powered by Segment Anything (SAM) for biological images, on Biodock. We’ve worked hard to make SAM much more useful for bio - read below to find out how!

57,576 просмотров • 3 лет назад •via X (Twitter)

Комментарии: 10

Фото профиля Michael Lee
Michael Lee3 лет назад

The key feature on Biodock is the ability to adjust the scale that SAM “sees” your images. Choose a smaller tile size to help SAM detect small objects like cells. Choose a larger size for organoids or tissue regions.

Фото профиля Michael Lee
Michael Lee3 лет назад

Being able to control this scale is critically important for bio images, where object sizing can vary drastically. We even have an interactive visual guide we overlay on your images to help with sizing.

Фото профиля Michael Lee
Michael Lee3 лет назад

Another important feature is the ability to order SAM’s predictions by size, depending on what you want. Change to “Smallest” to prioritize small objects like cells and organelles. Choose “Largest”, and you’ll get larger tissue regions and structures from the same click.

Фото профиля Michael Lee
Michael Lee3 лет назад

It's fast! GPUs work behind the scenes work to prep tiles for SAM in ~1 second on-demand, and fast on-hover inference means you can quickly evaluate choices without even clicking. Keyboard shortcuts to finalize objects makes your workflow easy.

Фото профиля Michael Lee
Michael Lee3 лет назад

Try it out for free at As always, we’ve updated our docs to provide easy step by step instructions on using SAM to power your image analysis.

Фото профиля Tim Aikin
Tim Aikin3 лет назад

Looking at you @ultrafastgrant @UnculturedTy

Фото профиля Michael Lee
Michael Lee3 лет назад

@ultrafastgrant @UnculturedTy Would love you all to try it out 😀

Фото профиля Maor Knafo
Maor Knafo3 лет назад

Awesome! Should it work on z stacks as well?

Фото профиля Michael Lee
Michael Lee3 лет назад

No 3D yet... definitely something we're looking forward to build!

Фото профиля Kibui Pauline
Kibui Pauline3 лет назад

Awesome. Is it possible to copy a specific image segment, only your cell of interest for example?

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