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Introducing AI Click powered by Segment Anything (SAM) for biological images, on Biodock. We’ve worked hard to make SAM much more useful for bio - read below to find out how!

57,577 Aufrufe • vor 3 Jahren •via X (Twitter)

10 Kommentare

Profilbild von Michael Lee
Michael Leevor 3 Jahren

The key feature on Biodock is the ability to adjust the scale that SAM “sees” your images. Choose a smaller tile size to help SAM detect small objects like cells. Choose a larger size for organoids or tissue regions.

Profilbild von Michael Lee
Michael Leevor 3 Jahren

Being able to control this scale is critically important for bio images, where object sizing can vary drastically. We even have an interactive visual guide we overlay on your images to help with sizing.

Profilbild von Michael Lee
Michael Leevor 3 Jahren

Another important feature is the ability to order SAM’s predictions by size, depending on what you want. Change to “Smallest” to prioritize small objects like cells and organelles. Choose “Largest”, and you’ll get larger tissue regions and structures from the same click.

Profilbild von Michael Lee
Michael Leevor 3 Jahren

It's fast! GPUs work behind the scenes work to prep tiles for SAM in ~1 second on-demand, and fast on-hover inference means you can quickly evaluate choices without even clicking. Keyboard shortcuts to finalize objects makes your workflow easy.

Profilbild von Michael Lee
Michael Leevor 3 Jahren

Try it out for free at As always, we’ve updated our docs to provide easy step by step instructions on using SAM to power your image analysis.

Profilbild von Tim Aikin
Tim Aikinvor 3 Jahren

Looking at you @ultrafastgrant @UnculturedTy

Profilbild von Michael Lee
Michael Leevor 3 Jahren

@ultrafastgrant @UnculturedTy Would love you all to try it out 😀

Profilbild von Maor Knafo
Maor Knafovor 3 Jahren

Awesome! Should it work on z stacks as well?

Profilbild von Michael Lee
Michael Leevor 3 Jahren

No 3D yet... definitely something we're looking forward to build!

Profilbild von Kibui Pauline
Kibui Paulinevor 3 Jahren

Awesome. Is it possible to copy a specific image segment, only your cell of interest for example?

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