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🚀 Introducing PantheonOS ( A Fully Open-Source Agent OS for Science PantheonOS began as a research project in my Stanford lab and has since evolved into a vision to redefine data science in the era of AI—starting with computational biology, especially single-cell and spatial genomics. PantheonOS is a general...

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17,248 görüntüleme • 10 ay önce •via X (Twitter)

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PantheonOS allows any biologist to perform complex data analyses of emerging single cell, multi-omics and spatial transcriptomics datasets end to end through AI agent and human collaboration. We are releasing six replays of use cases trajectories. Each "trajectory" is a complete end-to-end run, from prompt to analysis, to figures, and finally to report, and in fully inspectable and reproducible manner. See the six user cases in our PantheonOS Gallery: 1. 3D mouse embryo analysis: Tangram deconvolution and PyVista-based 3D visualization of E6 mouse embryo spatial transcriptomics data 2. 3D human fetal heart analysis: Spatial mapping of heart disease gene patterns using MERFISH data 3. Multi-omics spatial integration: Single cell multi-omics-to-spatial mapping with MOSCOT optimal transport 4. Gene panel design: 1000-plex immune-oncology MERFISH gene panel optimization 5. Cell segmentation benchmarking: Comparative evaluation of Cellpose-SAM, InstanSeg, StarDist, and other tools 6. Spatial disease biology: Ligand–receptor analysis of disease-associated tissue microenvironments We would love to hear how you can use PantheonOS for your research! Got an interesting agent run of your own and want to share? In the Pantheon UI, click Export Bundle (top-right of any chat) to package the full trajectory — chat history, code, figures, report — then submit it here:
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PantheonOS allows any biologist to perform complex data analyses of emerging single cell, multi-omics and spatial transcriptomics datasets end to end through AI agent and human collaboration. We are releasing six replays of use cases trajectories. Each "trajectory" is a complete end-to-end run, from prompt to analysis, to figures, and finally to report, and in fully inspectable and reproducible manner. See the six user cases in our PantheonOS Gallery: 1. 3D mouse embryo analysis: Tangram deconvolution and PyVista-based 3D visualization of E6 mouse embryo spatial transcriptomics data 2. 3D human fetal heart analysis: Spatial mapping of heart disease gene patterns using MERFISH data 3. Multi-omics spatial integration: Single cell multi-omics-to-spatial mapping with MOSCOT optimal transport 4. Gene panel design: 1000-plex immune-oncology MERFISH gene panel optimization 5. Cell segmentation benchmarking: Comparative evaluation of Cellpose-SAM, InstanSeg, StarDist, and other tools 6. Spatial disease biology: Ligand–receptor analysis of disease-associated tissue microenvironments We would love to hear how you can use PantheonOS for your research! Got an interesting agent run of your own and want to share? In the Pantheon UI, click Export Bundle (top-right of any chat) to package the full trajectory — chat history, code, figures, report — then submit it here:

evo-devo

13,151 görüntüleme • 1 ay önce

I am excited to introduce OpenGeoAgent, a powerful open-source multimodal AI agent for automated geospatial analysis and visualization! It supports QGIS, Jupyter notebook, and Python scripting. In this tutorial, you’ll learn how to automate GIS workflows using natural language, generate maps, analyze satellite data, and even run complex hydrological models. You can even interact with the agent using voice commands (no typing needed). Video: GitHub: QGIS Plugin: #geospatial #GeoAgent #OpenSource #AI
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I am excited to introduce OpenGeoAgent, a powerful open-source multimodal AI agent for automated geospatial analysis and visualization! It supports QGIS, Jupyter notebook, and Python scripting. In this tutorial, you’ll learn how to automate GIS workflows using natural language, generate maps, analyze satellite data, and even run complex hydrological models. You can even interact with the agent using voice commands (no typing needed). Video: GitHub: QGIS Plugin: #geospatial #GeoAgent #OpenSource #AI

Qiusheng Wu

61,696 görüntüleme • 2 ay önce

I made an AI data science team with Python. I'm excited to share my new project, the AI Data Science Team, a Python package for creating AI co-pilots and agents to assist in common data science tasks. I walk you through the GitHub page, showcasing the progress and potential of this project. I'll explain how these agents can streamline tasks like code generation and modeling pipeline creation, making data science projects more efficient. Introduction to AI Data Science Team Project Integrating Human-in-the-Loop Example: Accessing Agents for Feature Engineering Setting up Feature Engineering Agent Code On GitHub: Python AI-Tips Newsletter (stay updated as I build this project in the open):
12:57

I made an AI data science team with Python. I'm excited to share my new project, the AI Data Science Team, a Python package for creating AI co-pilots and agents to assist in common data science tasks. I walk you through the GitHub page, showcasing the progress and potential of this project. I'll explain how these agents can streamline tasks like code generation and modeling pipeline creation, making data science projects more efficient. Introduction to AI Data Science Team Project Integrating Human-in-the-Loop Example: Accessing Agents for Feature Engineering Setting up Feature Engineering Agent Code On GitHub: Python AI-Tips Newsletter (stay updated as I build this project in the open):

Matt Dancho (Business Science)

11,799 görüntüleme • 1 yıl önce

I'm excited to introduce my AI Machine Learning Agent that built 32 ML models in 30 seconds. Today, I'll share with you how to automate building 100s of ML models with the AI ML Agent, which is available on GitHub. We'll create an ML Agent focusing on a Customer Churn Problem. I'll guide you through setting up the ML Agent, creating dozens of ML models, and loading the best model for production. This AI is a huge time-saver! Table of Contents: 00:00 Introduction to my AI Data Science Team 02:56 Setting Up AI Data Science Team 04:48 Running the ML Agent Code 07:12 Create (and Run) the AI Machine Learning Agent 09:53 Reviewing ML Model Summary 12:00 Saving and Loading Models 13:00 Next Steps + Project Roadmap + AI Bootcamp Github to AI Data Science Team (Data Science Agents): Get the Code and Future Updates by Joining my Python AI/ML Tips Newsletter: P.S. - Want to learn how to build AI projects companies actually want? (live Python Code) On Wednesday, May 21st, I'm sharing one of my best AI Projects: AI Customer Segmentation Agent with Python Register here (570+ registered):
15:38

I'm excited to introduce my AI Machine Learning Agent that built 32 ML models in 30 seconds. Today, I'll share with you how to automate building 100s of ML models with the AI ML Agent, which is available on GitHub. We'll create an ML Agent focusing on a Customer Churn Problem. I'll guide you through setting up the ML Agent, creating dozens of ML models, and loading the best model for production. This AI is a huge time-saver! Table of Contents: 00:00 Introduction to my AI Data Science Team 02:56 Setting Up AI Data Science Team 04:48 Running the ML Agent Code 07:12 Create (and Run) the AI Machine Learning Agent 09:53 Reviewing ML Model Summary 12:00 Saving and Loading Models 13:00 Next Steps + Project Roadmap + AI Bootcamp Github to AI Data Science Team (Data Science Agents): Get the Code and Future Updates by Joining my Python AI/ML Tips Newsletter: P.S. - Want to learn how to build AI projects companies actually want? (live Python Code) On Wednesday, May 21st, I'm sharing one of my best AI Projects: AI Customer Segmentation Agent with Python Register here (570+ registered):

Matt Dancho (Business Science)

35,452 görüntüleme • 1 yıl önce

Agents are finally starting to work in biology. We’ve partnered with Anthropic and major biotech vendors - Vizgen, AtlasXOmics, Takara, 10x Genomics - to build a tool that allows scientists to steer their own analysis with natural language. Raw spatial data to publication quality figures. Our team believes this will soon be the standard way biologists interact with data. Spatial biology agents look a bit different from coding products: - tailored to the molecular details of each kit type - run in sandboxes on very large machines - orchestrate data infra, eg. bioinformatics workflows, with tool calls - build graphical analysis notebooks to communicate results Detailed breakdown of engineering decisions, product philosophy and concrete flows follows:
1:27

Agents are finally starting to work in biology. We’ve partnered with Anthropic and major biotech vendors - Vizgen, AtlasXOmics, Takara, 10x Genomics - to build a tool that allows scientists to steer their own analysis with natural language. Raw spatial data to publication quality figures. Our team believes this will soon be the standard way biologists interact with data. Spatial biology agents look a bit different from coding products: - tailored to the molecular details of each kit type - run in sandboxes on very large machines - orchestrate data infra, eg. bioinformatics workflows, with tool calls - build graphical analysis notebooks to communicate results Detailed breakdown of engineering decisions, product philosophy and concrete flows follows:

Kenny Workman

114,068 görüntüleme • 8 ay önce

I'm excited to introduce my AI Exploratory Data Analysis (EDA) Agent that built EDA reports, performs correlation analysis, and missing data analysis in 20 seconds. Today, I'll share with you how to automate creating EDA reports with the AI EDA Agent, which is available on GitHub. We'll create an EDA Agent focusing on a Customer Churn Problem. I'll guide you through setting up the EDA Agent, creating EDA reports, and analyzing the findings. This AI agent is a huge time-saver! Table of Contents: 00:00 Introduction to EDA Tools Agent 01:20 Get the AI Data Science Team 04:49 Create the EDA Tools Agent 06:35 Using the EDA Tools Agent for Missing Data and Correlation Funnels 10:00 Get SweetViz EDA Reports with AI 12:00 8-Week AI Bootcamp Github to AI Data Science Team (Army of Copilots): Get the Code and Future Updates by Joining my Python AI/ML Tips Newsletter: P.S. - Want to learn how to build AI projects companies actually want? (live Python Code) On Wednesday, February 12th, I'm sharing one of my best AI Projects: Business Intelligence with AI Register here (1570+ registered):
13:04

I'm excited to introduce my AI Exploratory Data Analysis (EDA) Agent that built EDA reports, performs correlation analysis, and missing data analysis in 20 seconds. Today, I'll share with you how to automate creating EDA reports with the AI EDA Agent, which is available on GitHub. We'll create an EDA Agent focusing on a Customer Churn Problem. I'll guide you through setting up the EDA Agent, creating EDA reports, and analyzing the findings. This AI agent is a huge time-saver! Table of Contents: 00:00 Introduction to EDA Tools Agent 01:20 Get the AI Data Science Team 04:49 Create the EDA Tools Agent 06:35 Using the EDA Tools Agent for Missing Data and Correlation Funnels 10:00 Get SweetViz EDA Reports with AI 12:00 8-Week AI Bootcamp Github to AI Data Science Team (Army of Copilots): Get the Code and Future Updates by Joining my Python AI/ML Tips Newsletter: P.S. - Want to learn how to build AI projects companies actually want? (live Python Code) On Wednesday, February 12th, I'm sharing one of my best AI Projects: Business Intelligence with AI Register here (1570+ registered):

Matt Dancho (Business Science)

31,079 görüntüleme • 1 yıl önce

Microsoft has just announced Copilot's ability to process data in Excel by generating Python code. - Request a detailed analysis - Copilot generates Python - Excel executes the code to show the result All without having to write a single formula. Just natural language. Huge deal for data analysis and visualization.
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Microsoft has just announced Copilot's ability to process data in Excel by generating Python code. - Request a detailed analysis - Copilot generates Python - Excel executes the code to show the result All without having to write a single formula. Just natural language. Huge deal for data analysis and visualization.

Paul Couvert

373,713 görüntüleme • 1 yıl önce

Microsoft has launched a powerful new data analysis tool! Introducing Data Formulator, a 100% open-source LLM-powered, no-code tool that transforms data in a snap and creates stunning visualizations. Key features include: 🤖 AI-powered data transformation 🖱️ Interactive drag-and-drop UI for visualizations 💬 Seamless blend of UI & natural language inputs But that’s not all: You can even create charts beyond your initial dataset. Data Formulator automatically identifies extra computation needs, generates fields for you, and outputs the final visualization. Find the GitHub repo in the next tweet! _____ Find me → Akshay 🚀 ✔️ For more insights and tutorials on AI and Machine Learning.
0:24

Microsoft has launched a powerful new data analysis tool! Introducing Data Formulator, a 100% open-source LLM-powered, no-code tool that transforms data in a snap and creates stunning visualizations. Key features include: 🤖 AI-powered data transformation 🖱️ Interactive drag-and-drop UI for visualizations 💬 Seamless blend of UI & natural language inputs But that’s not all: You can even create charts beyond your initial dataset. Data Formulator automatically identifies extra computation needs, generates fields for you, and outputs the final visualization. Find the GitHub repo in the next tweet! _____ Find me → Akshay 🚀 ✔️ For more insights and tutorials on AI and Machine Learning.

Akshay 🚀

280,449 görüntüleme • 1 yıl önce

Today, we’re introducing Decide Agent, a frontier-level AI agent for Excel analysis. Decide Agent scored 82.50% on SpreadsheetBench, the public standard benchmark for Excel AI agents, ranking #4 globally. This is the same leaderboard used by Claude, OpenAI, and Microsoft to evaluate their spreadsheet agents. We’re here to push the frontier in Excel and data analytics. Decide Agent is now generally available at trydecide . ai
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Today, we’re introducing Decide Agent, a frontier-level AI agent for Excel analysis. Decide Agent scored 82.50% on SpreadsheetBench, the public standard benchmark for Excel AI agents, ranking #4 globally. This is the same leaderboard used by Claude, OpenAI, and Microsoft to evaluate their spreadsheet agents. We’re here to push the frontier in Excel and data analytics. Decide Agent is now generally available at trydecide . ai

Ab.

40,286 görüntüleme • 5 ay önce

Today, we’re pushing a major update to Edison Analysis, our data analysis agent, which is tuned for scientific research and SOTA across data analysis benchmarks. In contrast to Kosmos, which runs for 6-12 hours and produces tens of thousands of lines of code, Edison Analysis runs for seconds to minutes and is best for specific, well-defined computational tasks. It is available both on our platform under the Analysis tab, and via API, and costs only one credit per run, so it is available to users on both free and paid tiers. Edison Analysis is a modified version of the data analysis agent Kosmos uses in its trajectories. Try it out! One of the most important improvements over our previous data analysis agents has been the addition of a specialized data retrieval tool. Edison Analysis can either use this tool to access data, or can pull data down directly via API. To evaluate this tool, we ranked the most commonly used public data repositories across recent papers from BioRxiv, and created a new benchmark that measures the ability of a language agent system to retrieve raw data from those sources. Edison Analysis gets 71% on this benchmark, and we’ll be working to increase this over time. You can read more about our benchmarks in the our blog post, link below. Some features worth highlighting: 1. Edison Analysis produces a report on the analysis it runs, along with a Jupyter notebook that you can download to reproduce the analysis yourself. Every figure it produces is linked back to the specific lines of code used to produce the figure, to make it easy to reproduce. 2. It works well with both Python and R. 3. One of the best uses for Edison Analysis is to use it to retrieve datasets that you can then analyze with Kosmos. We have a bunch of major improvements to Edison Analysis coming in the next few months that we’re excited to share. In the meantime, congratulations to the team, especially Ludovico Mitchener, Jon Laurent, Conor Igoe , Alex Andonian, and many more.
1:12

Today, we’re pushing a major update to Edison Analysis, our data analysis agent, which is tuned for scientific research and SOTA across data analysis benchmarks. In contrast to Kosmos, which runs for 6-12 hours and produces tens of thousands of lines of code, Edison Analysis runs for seconds to minutes and is best for specific, well-defined computational tasks. It is available both on our platform under the Analysis tab, and via API, and costs only one credit per run, so it is available to users on both free and paid tiers. Edison Analysis is a modified version of the data analysis agent Kosmos uses in its trajectories. Try it out! One of the most important improvements over our previous data analysis agents has been the addition of a specialized data retrieval tool. Edison Analysis can either use this tool to access data, or can pull data down directly via API. To evaluate this tool, we ranked the most commonly used public data repositories across recent papers from BioRxiv, and created a new benchmark that measures the ability of a language agent system to retrieve raw data from those sources. Edison Analysis gets 71% on this benchmark, and we’ll be working to increase this over time. You can read more about our benchmarks in the our blog post, link below. Some features worth highlighting: 1. Edison Analysis produces a report on the analysis it runs, along with a Jupyter notebook that you can download to reproduce the analysis yourself. Every figure it produces is linked back to the specific lines of code used to produce the figure, to make it easy to reproduce. 2. It works well with both Python and R. 3. One of the best uses for Edison Analysis is to use it to retrieve datasets that you can then analyze with Kosmos. We have a bunch of major improvements to Edison Analysis coming in the next few months that we’re excited to share. In the meantime, congratulations to the team, especially Ludovico Mitchener, Jon Laurent, Conor Igoe , Alex Andonian, and many more.

Sam Rodriques

61,852 görüntüleme • 7 ay önce

Today we're open sourcing a technical preview of the GitHub Copilot CLI SDK. Build agents with custom tools in Go, Python, TypeScript, and C#. Built on the same agent loop that powers the Copilot CLI and GitHub Coding Agent. Supports BYOK, and any model. Here is the Copilot CLI driving Excel:
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Today we're open sourcing a technical preview of the GitHub Copilot CLI SDK. Build agents with custom tools in Go, Python, TypeScript, and C#. Built on the same agent loop that powers the Copilot CLI and GitHub Coding Agent. Supports BYOK, and any model. Here is the Copilot CLI driving Excel:

Evan Boyle

184,432 görüntüleme • 5 ay önce

New course: Gemini CLI: Code & Create with an Open-Source Agent, built with Google Cloud Tech/Gemini CLI and taught by Jack Wotherspoon. Agentic coding assistants like Gemini CLI are transforming how developers work. This short course teaches you to use Google's open-source agent to coordinate local tools and cloud services for coding and non-coding workflows. Gemini CLI works from your terminal, so it works with your local files and development tools. You can also connect it to services through MCP. Then provide high-level instructions, and it autonomously plans and executes complex workflows. Skills you'll gain: - Build website features and automate code reviews with GitHub ActionsCreate data dashboards that combine local files with cloud data sources - Use MCP servers and extensions to orchestrate workflows across GitHub, Canva, and Google Workspace - Generate social media content from multimedia files like conference recordings I particularly appreciate that Gemini CLI is open-source. You can see exactly how it works, read the prompts it uses, and understand its architecture. The community has contributed thousands of pull requests. Since Gemini 3’s release I've found Gemini CLI highly capable - this is a tool worth having in your toolbox! Whether you're prototyping applications, automating workflows, or working with multimedia content, join to learn to delegate complex tasks and build faster:
2:50

New course: Gemini CLI: Code & Create with an Open-Source Agent, built with Google Cloud Tech/Gemini CLI and taught by Jack Wotherspoon. Agentic coding assistants like Gemini CLI are transforming how developers work. This short course teaches you to use Google's open-source agent to coordinate local tools and cloud services for coding and non-coding workflows. Gemini CLI works from your terminal, so it works with your local files and development tools. You can also connect it to services through MCP. Then provide high-level instructions, and it autonomously plans and executes complex workflows. Skills you'll gain: - Build website features and automate code reviews with GitHub ActionsCreate data dashboards that combine local files with cloud data sources - Use MCP servers and extensions to orchestrate workflows across GitHub, Canva, and Google Workspace - Generate social media content from multimedia files like conference recordings I particularly appreciate that Gemini CLI is open-source. You can see exactly how it works, read the prompts it uses, and understand its architecture. The community has contributed thousands of pull requests. Since Gemini 3’s release I've found Gemini CLI highly capable - this is a tool worth having in your toolbox! Whether you're prototyping applications, automating workflows, or working with multimedia content, join to learn to delegate complex tasks and build faster:

Andrew Ng

124,710 görüntüleme • 5 ay önce

Jupyter Agents - LLMs running data analysis directly in a notebook! The agent can load data, execute code, plot results and following your guidance and ideas! A very natural way to collaborate with an LLM over data and it's just scratching the surface of what's possible soon!
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Jupyter Agents - LLMs running data analysis directly in a notebook! The agent can load data, execute code, plot results and following your guidance and ideas! A very natural way to collaborate with an LLM over data and it's just scratching the surface of what's possible soon!

Leandro von Werra

200,291 görüntüleme • 1 yıl önce

PhD Students – Use this FREE tool to analyze data in 10 sec. This tool is used by more than 500,000 researchers. 1. Go to 2. Click on Data Analysis and upload your data file. 3. Write your prompt for data analysis. 4. For example, generate graphs for data analysis. 5. AnswerThis will generate variety of graphs for you. 6. It also generates an insightful data analysis report. You can download the graphs and the report. Try AnswerThis today. It’s FREE. AnswerThis link:
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PhD Students – Use this FREE tool to analyze data in 10 sec. This tool is used by more than 500,000 researchers. 1. Go to 2. Click on Data Analysis and upload your data file. 3. Write your prompt for data analysis. 4. For example, generate graphs for data analysis. 5. AnswerThis will generate variety of graphs for you. 6. It also generates an insightful data analysis report. You can download the graphs and the report. Try AnswerThis today. It’s FREE. AnswerThis link:

Faheem Ullah

205,745 görüntüleme • 3 ay önce

This guy built an entire AI data science team in Python. Then open-sourced (100% free). It automates data science workflows with AI, including data loading, cleaning, exploratory analysis, and feature engineering. And it tracks each step in a 100% reproducible pipeline. 00:00 Project Overview 01:32 Diving into the AI Data Science Workflow and Data Loading 02:10 Data Wrangling and Cleaning 03:33 Data Visualization Insights & Plotting 04:08 Feature Engineering 05:00 Live 1-Hour Workshop 05:44 AI Data Science Team Python Library 🔗 AI Data Science Team On GitHub (Give it a Star) 🔗 Join My Next Live 1-Hour Agentic AI Workshop (Free):
7:04

This guy built an entire AI data science team in Python. Then open-sourced (100% free). It automates data science workflows with AI, including data loading, cleaning, exploratory analysis, and feature engineering. And it tracks each step in a 100% reproducible pipeline. 00:00 Project Overview 01:32 Diving into the AI Data Science Workflow and Data Loading 02:10 Data Wrangling and Cleaning 03:33 Data Visualization Insights & Plotting 04:08 Feature Engineering 05:00 Live 1-Hour Workshop 05:44 AI Data Science Team Python Library 🔗 AI Data Science Team On GitHub (Give it a Star) 🔗 Join My Next Live 1-Hour Agentic AI Workshop (Free):

Matt Dancho (Business Science)

85,279 görüntüleme • 6 ay önce

🔬 Exciting News! Our manuscript, "scGPT: toward building a foundation model for single-cell multi-omics using generative AI" is now finally published in Nature Methods (Nature Methods) 🎉 !!! (Re-)Introducing scGPT: A transformative foundation model engineered for single-cell omics analysis. Developed through the analysis of over 33 million human cells, scGPT sets a new benchmark for application versatility, offering both fine-tuning and zero-shot capabilities. Since its preprint in May 2023, scGPT has significantly impacted the field, evidenced by 13K+ installations, 600+ GitHub stars 🌟, and 40+ citations before its official publication! scGPT has been validated by numerous benchmark studies as a leading foundation model in single-cell analysis. Its pre-trained embeddings extend its utility beyond single-cell studies, enhancing a variety of downstream tasks including protein enrichment and genetic perturbation predictions. Some key updates lately: ---Expanded zero-shot applications for efficient reference mapping and integration, now with CellXGene census integration. ---Advanced perturbation analysis capabilities, including genome-scale perturb-seq data analysis and bulk sequencing data generalization. ---Upgraded scGPT package, offering versatile model loading compatible with PyTorch and flash-attn, for both GPU and CPU. ---Cloud-based scGPT applications for reference mapping, cell annotation, and gene regulatory network inference are available on ---Integration with Hugging Face for easier model training. Limitations: scGPT is an early foray into foundation models for single-cell omics, facing challenges like limited zero-shot learning in some tasks, pretraining constraints, data quality issues, and evaluation limitations. See our Supplementary Notes for details. 🚀 Future Work? Short-Term Goals: 1. Releasing a Mouse Model for broader analysis. 2. Developing a comprehensive evaluation suite for foundation models in single-cell analysis. 3. Creating a foundation model for single-cell spatial omics. 4. Enhancing zero-shot capacity by integrating scGPT with RAG (e.g., knowledge graphs). Long-Term Goals: 1. Expanding scGPT for comprehensive single-cell multi-omics analysis. 2. Developing an in-silico perturbation model for predicting genetic perturbation effects. 3. Merging scGPT with multi-modal genomic sequence models for a deeper understanding of cell biology. 📚 Access the paper on Nature Methods: 🔬Preprint in Bioarixv: 💻 All our codes/data/weights are open source: Wholehearted congratulations to all the authors, especially the two co-first authors, Haotian (Haotian Cui ) and Chloe (ChloeXWang), who are really the emerging superstars in AI and biology! Vector Institute Peter Munk Cardiac Centre AI U of T Department of Computer Science Department of Laboratory Medicine & Pathobiology University Health Network University of Toronto #scGPT #GenerativeAI #AI4Science #Combio #opensource
0:52

🔬 Exciting News! Our manuscript, "scGPT: toward building a foundation model for single-cell multi-omics using generative AI" is now finally published in Nature Methods (Nature Methods) 🎉 !!! (Re-)Introducing scGPT: A transformative foundation model engineered for single-cell omics analysis. Developed through the analysis of over 33 million human cells, scGPT sets a new benchmark for application versatility, offering both fine-tuning and zero-shot capabilities. Since its preprint in May 2023, scGPT has significantly impacted the field, evidenced by 13K+ installations, 600+ GitHub stars 🌟, and 40+ citations before its official publication! scGPT has been validated by numerous benchmark studies as a leading foundation model in single-cell analysis. Its pre-trained embeddings extend its utility beyond single-cell studies, enhancing a variety of downstream tasks including protein enrichment and genetic perturbation predictions. Some key updates lately: ---Expanded zero-shot applications for efficient reference mapping and integration, now with CellXGene census integration. ---Advanced perturbation analysis capabilities, including genome-scale perturb-seq data analysis and bulk sequencing data generalization. ---Upgraded scGPT package, offering versatile model loading compatible with PyTorch and flash-attn, for both GPU and CPU. ---Cloud-based scGPT applications for reference mapping, cell annotation, and gene regulatory network inference are available on ---Integration with Hugging Face for easier model training. Limitations: scGPT is an early foray into foundation models for single-cell omics, facing challenges like limited zero-shot learning in some tasks, pretraining constraints, data quality issues, and evaluation limitations. See our Supplementary Notes for details. 🚀 Future Work? Short-Term Goals: 1. Releasing a Mouse Model for broader analysis. 2. Developing a comprehensive evaluation suite for foundation models in single-cell analysis. 3. Creating a foundation model for single-cell spatial omics. 4. Enhancing zero-shot capacity by integrating scGPT with RAG (e.g., knowledge graphs). Long-Term Goals: 1. Expanding scGPT for comprehensive single-cell multi-omics analysis. 2. Developing an in-silico perturbation model for predicting genetic perturbation effects. 3. Merging scGPT with multi-modal genomic sequence models for a deeper understanding of cell biology. 📚 Access the paper on Nature Methods: 🔬Preprint in Bioarixv: 💻 All our codes/data/weights are open source: Wholehearted congratulations to all the authors, especially the two co-first authors, Haotian (Haotian Cui ) and Chloe (ChloeXWang), who are really the emerging superstars in AI and biology! Vector Institute Peter Munk Cardiac Centre AI U of T Department of Computer Science Department of Laboratory Medicine & Pathobiology University Health Network University of Toronto #scGPT #GenerativeAI #AI4Science #Combio #opensource

Bo Wang

199,638 görüntüleme • 2 yıl önce

How to Create a Professional Data Analysis Report—Even If You’re Not a Data Specialist Today on Agent 101—MuleRun’s first review series where real users test AI agents in real work scenarios—we introduce “Smart Q,” a data analysis expert agent designed to turn anyone into a data-savvy reporter. 1. Team Expertise Smart Q was developed by a team with over 10 years of data analysis experience at a giant corporation. This background ensures that the agent delivers insights and reports that meet professional standards. 2. The Traditional Approach & Its Pain Points Traditionally, creating a data analysis report required deep expertise in tools like Excel, SQL, or Python. You’d need to clean the data, run calculations, generate visualizations, and summarize findings—all of which is time-consuming and prone to human error. For non-specialists, this process is often inaccessible and intimidating. 3. How Smart Q Uses AI—and What Problems It Solves With Smart Q, the entire reporting process is simplified into three steps: upload your raw data, ask a question, and receive charts, key insights, and a polished report—all generated by AI expert. Its key advantages include: ✅Accessibility:No technical background required. ✅Speed:Get a complete analysis in minutes, not hours. ✅Clarity:Receive expert-level conclusions presented in clear, actionable language. Want to become a tester for future AI agents? Engage with this video—comment, like, or share—and we’ll be sure to notice your support! 🎥 See Smart Q in action. #mulerun #mulerun4U #SmartQ
4:11

How to Create a Professional Data Analysis Report—Even If You’re Not a Data Specialist Today on Agent 101—MuleRun’s first review series where real users test AI agents in real work scenarios—we introduce “Smart Q,” a data analysis expert agent designed to turn anyone into a data-savvy reporter. 1. Team Expertise Smart Q was developed by a team with over 10 years of data analysis experience at a giant corporation. This background ensures that the agent delivers insights and reports that meet professional standards. 2. The Traditional Approach & Its Pain Points Traditionally, creating a data analysis report required deep expertise in tools like Excel, SQL, or Python. You’d need to clean the data, run calculations, generate visualizations, and summarize findings—all of which is time-consuming and prone to human error. For non-specialists, this process is often inaccessible and intimidating. 3. How Smart Q Uses AI—and What Problems It Solves With Smart Q, the entire reporting process is simplified into three steps: upload your raw data, ask a question, and receive charts, key insights, and a polished report—all generated by AI expert. Its key advantages include: ✅Accessibility:No technical background required. ✅Speed:Get a complete analysis in minutes, not hours. ✅Clarity:Receive expert-level conclusions presented in clear, actionable language. Want to become a tester for future AI agents? Engage with this video—comment, like, or share—and we’ll be sure to notice your support! 🎥 See Smart Q in action. #mulerun #mulerun4U #SmartQ

MuleRun

30,549 görüntüleme • 7 ay önce

Google release its Data science Agent The Google Data Science Agent in Colab (powered by Gemini) revolutionizes data analysis by allowing users to easily formulate their analysis goals in natural language. This automatically generates fully functional Colab notebooks, which drastically reduces tedious routine work such as code creation, data import and setup. Particularly noteworthy are the flexibility of the generated notebooks, the ease of collaboration and the fast, accurate results thanks to Gemini 2.0.
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Google release its Data science Agent The Google Data Science Agent in Colab (powered by Gemini) revolutionizes data analysis by allowing users to easily formulate their analysis goals in natural language. This automatically generates fully functional Colab notebooks, which drastically reduces tedious routine work such as code creation, data import and setup. Particularly noteworthy are the flexibility of the generated notebooks, the ease of collaboration and the fast, accurate results thanks to Gemini 2.0.

Chubby♨️

111,412 görüntüleme • 1 yıl önce

🚀 Introducing AgentCPM-Explore: The First Open-Source 4B-Agent Model to Conquer GAIA & Complex Real-World Tasks! 🤗 Hugging Face: 🔗 GitHub: ✨ Key Highlights: ✅ SOTA Agentic Performance: Sets a new benchmark for 4B-scale agent models—outperforming all peers, surpassing 8B models, and rivaling select 30B+ and closed-source LLMs. 🧠 Deep Research Capability: Excels at long-horizon reasoning, supports 100+ turns of autonomous interaction with multi-source cross-validation, human-like self-correction, and dynamic tool use + strategy adaptation—just like a real researcher! 🔓 Full-Stack Open Source: We’re open-sourcing the entire end-to-end agent stack—not just the model! Empower your own innovations with - AgentRL: Asynchronous reinforcement learning framework - AgentDock: Secure, extensible tool sandbox - AgentToLeaP: An one-click evaluation platform for agent tool-learning capabilitie - Full training data pipeline & reproducible workflows #AgentCPM #OpenSourceAI #AgenticAI #AI #GAIA #LLM #OpenBMB #AIAgents #HuggingFace
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🚀 Introducing AgentCPM-Explore: The First Open-Source 4B-Agent Model to Conquer GAIA & Complex Real-World Tasks! 🤗 Hugging Face: 🔗 GitHub: ✨ Key Highlights: ✅ SOTA Agentic Performance: Sets a new benchmark for 4B-scale agent models—outperforming all peers, surpassing 8B models, and rivaling select 30B+ and closed-source LLMs. 🧠 Deep Research Capability: Excels at long-horizon reasoning, supports 100+ turns of autonomous interaction with multi-source cross-validation, human-like self-correction, and dynamic tool use + strategy adaptation—just like a real researcher! 🔓 Full-Stack Open Source: We’re open-sourcing the entire end-to-end agent stack—not just the model! Empower your own innovations with - AgentRL: Asynchronous reinforcement learning framework - AgentDock: Secure, extensible tool sandbox - AgentToLeaP: An one-click evaluation platform for agent tool-learning capabilitie - Full training data pipeline & reproducible workflows #AgentCPM #OpenSourceAI #AgenticAI #AI #GAIA #LLM #OpenBMB #AIAgents #HuggingFace

OpenBMB

13,996 görüntüleme • 5 ay önce

Data teams spend weeks on simple requests. (This AI answers them in minutes.) Most data analysis is repetitive manual tasks. Data teams spend more time on setup than actual analysis. The workflow usually looks like this: → Run some exploratory data analysis in a local Jupyter notebook or environment → Pull data from multiple disconnected sources → Write code from scratch for every analysis → Export static charts that stakeholders can't explore (or wrestle with legacy BI to create a dashboard) → Manually send updates via email or Slack when data changes → Start over for each new request Most teams accept this as "how data analysis works." While business decisions wait for insights. That's where Fabi changes the entire approach. It's a powerful, AI-native platform built for teams that want to boost productivity and supercharge their data workflows. Instead of working on separate tools and manual processes, you collaborate on analysis that automatically delivers insights where teams work. Here's what makes Fabi different: AI-Native Analysis Environment ↳ SQL and Python work together with AI assistance that handles coding and debugging automatically. Smart Automation Workflows ↳ Automatically send AI-powered reports and summaries right where business works in Slack, email, and spreadsheets. Universal Data Integration ↳ Analyze data from files, Google Sheets, Airtable, plus your data warehouse and databases in one place. Collaborative Data Apps ↳ Create interactive dashboards that stakeholders can explore and ask follow-up questions directly. What you can do with Fabi that legacy BI can't: ➟ Send AI-generated insights directly to Slack channels ➟ Automatically email data summaries to stakeholders ➟ Analyze uploaded files without complex ETL processes ➟ Collaborate on analysis like Google Docs for data ➟ Build workflows that push insights to spreadsheets Perfect for teams that want to move beyond the constraints of legacy and increase their impact. Teams using Fabi see immediate results: ✓ Insights delivered in minutes instead of days ✓ Reduced context switching between tools ✓ Stakeholders explore data independently ✓ Workflows automated to save hours of manual work From analysis to automated delivery - all in one AI-native environment. 📌 Try Fabi today: 👉 Follow Fabi.ai and marc for Fabi updates. 🔄 Repost to help other teams streamline data analysis #DataAnalysis #ModernBI #DataOps #InteractiveDashboards #FabiPartnership #SponsoredByFabi
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Data teams spend weeks on simple requests. (This AI answers them in minutes.) Most data analysis is repetitive manual tasks. Data teams spend more time on setup than actual analysis. The workflow usually looks like this: → Run some exploratory data analysis in a local Jupyter notebook or environment → Pull data from multiple disconnected sources → Write code from scratch for every analysis → Export static charts that stakeholders can't explore (or wrestle with legacy BI to create a dashboard) → Manually send updates via email or Slack when data changes → Start over for each new request Most teams accept this as "how data analysis works." While business decisions wait for insights. That's where Fabi changes the entire approach. It's a powerful, AI-native platform built for teams that want to boost productivity and supercharge their data workflows. Instead of working on separate tools and manual processes, you collaborate on analysis that automatically delivers insights where teams work. Here's what makes Fabi different: AI-Native Analysis Environment ↳ SQL and Python work together with AI assistance that handles coding and debugging automatically. Smart Automation Workflows ↳ Automatically send AI-powered reports and summaries right where business works in Slack, email, and spreadsheets. Universal Data Integration ↳ Analyze data from files, Google Sheets, Airtable, plus your data warehouse and databases in one place. Collaborative Data Apps ↳ Create interactive dashboards that stakeholders can explore and ask follow-up questions directly. What you can do with Fabi that legacy BI can't: ➟ Send AI-generated insights directly to Slack channels ➟ Automatically email data summaries to stakeholders ➟ Analyze uploaded files without complex ETL processes ➟ Collaborate on analysis like Google Docs for data ➟ Build workflows that push insights to spreadsheets Perfect for teams that want to move beyond the constraints of legacy and increase their impact. Teams using Fabi see immediate results: ✓ Insights delivered in minutes instead of days ✓ Reduced context switching between tools ✓ Stakeholders explore data independently ✓ Workflows automated to save hours of manual work From analysis to automated delivery - all in one AI-native environment. 📌 Try Fabi today: 👉 Follow Fabi.ai and marc for Fabi updates. 🔄 Repost to help other teams streamline data analysis #DataAnalysis #ModernBI #DataOps #InteractiveDashboards #FabiPartnership #SponsoredByFabi

Andrew Bolis

36,504 görüntüleme • 9 ay önce