🔥 Bactopia v3 is here! 🔥 The Nextflow pipeline for bacterial genomes is now faster, packed with more tools, updated docs, and much much more! Get started at: #bioinformatics #genomics

This release is a complete revamp of the main workflow, includes many new Bactopia Tools (60 total now!), and multiple contributions to @nf_core modules and Bioconda. Full release information available here:

Major thank you to all the people who have helped with testing v3! Big thanks to my fellow Wyoming Public Health Lab members, Tim Read, EMERGENT, CAPE, and open-source tool developers! Very grateful for your feedback and suggestions!

I've put a lot of work in to the documentation, so to get started with this new release I recommend giving the tutorial a try. Please reach out if you have questions.

Finally, a major goal with this release was to reduce the maintenance burden of Bactopia for myself. I think I've largely succeeded in this area! In other words, it is now much easier for myself to continue to develop Bactopia!

@nextflowio Absolute unit of a pipeline, kudos for such an impressive work.

I am interested in collaborating with you in any project related to metagenomic analysis