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I'm prototyping a little tool for interactively visualizing the near-nearest neighbor network in single-cell RNA-seq. Clicking a cell triggers a wave, revealing its nearest neighbors, then their neighbors, and so forth. Data: 10k PBMCs from a Healthy Donor (v3), 10x Genomics

Brad Krajina

1,784 subscribers

36,019 views • 1 year ago •via X (Twitter)

Health & Wellness Science & Technology Education

Anya Rossi• Live Now

Private livecam show

11 Comments

Brad Krajina1 year ago

This visualization was made in TypeScript with PixiJS and captured in real-time in a browser.

PDF GPT1 year ago

This is my favorite AI tool for reviewing reports. Just upload a report, ask for a summary, and get one in seconds. It's like ChatGPT, but built for documents. Try it for free.

Thomas Czerniawski1 year ago

So exciting to see new ways to poke and prod at higher dimensions

Brad Krajina1 year ago

Thanks Thomas! With the scale and dimensionality of the data we're dealing with today, I think there is so much room for re-thinking the way that we interface it.

Garry P. Nolan1 year ago

Fantastic!

⌬Michel Rickhaus1 year ago

Gorgeous!

Brad Krajina1 year ago

Thank you!

Jeffrey West1 year ago

this is cool!

Brad Krajina1 year ago

Thanks Jeffrey!

Curtis1 year ago

This is really cool!!

Brad Krajina1 year ago

Thanks Curtis!

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