Video yükleniyor...

Video Yüklenemedi

Ana Sayfaya Dön

Refolding proteins with #blender3d 3.6 beta using using the new #SimulationNodes inside of #GeometryNodes and #MolecularNodes. Most MD literature ignores the molecular monkey heads that might be present on the nanoscale, but no longer

bradyajohnston's profile picture

Brady Johnston

16,830 subscribers

69,534 görüntüleme • 3 yıl önce •via X (Twitter)

OyunBilim & TeknolojiEğitim#blender3d#SimulationNodes#GeometryNodes#MolecularNodes
LIVE

Anya Rossi• Live Now

Private livecam show

11 Yorum

Brady Johnston profil fotoğrafı
Brady Johnston3 yıl önce

Some people got weirdly angry at me last time I joked about MD, so as a caveat this obviously isn't actual MD. I've implemented some basic force fields which work kind well but as you can see from the bond lengths it's not accurate

Brady Johnston profil fotoğrafı
Brady Johnston3 yıl önce

It's close to being able to do bespoke molecular 'simulations' for the sake of animation. Last part to implement is dihdrals, which is proving very difficult inside of #GeometryNodes . Might switch to try and do coarse grain instead and just instance planar molecules correctly

David Mcsween profil fotoğrafı
David Mcsween3 yıl önce

Is there an infinite monkey theorem for rewriting DNA with monkeys?

Brady Johnston profil fotoğrafı
Brady Johnston3 yıl önce

not yet but our top minds are working on it

Kelvin Lau 🧬🧪💎 profil fotoğrafı
Kelvin Lau 🧬🧪💎3 yıl önce

Secret to protein folding

Brady Johnston profil fotoğrafı
Brady Johnston3 yıl önce

eat ya heart out

Matthew Clark profil fotoğrafı
Matthew Clark3 yıl önce

Very well done! This is so exciting!

Annette Dowd on Bluesky profil fotoğrafı
Annette Dowd on Bluesky3 yıl önce

Best simulation of an intracellular nano monkey head I have ever seen.

Adrian Quintero-Mart profil fotoğrafı
Adrian Quintero-Mart3 yıl önce

I love the monkey head. Can we incorporate it to common visualisation software? 😆

Thibault Tubiana profil fotoğrafı
Thibault Tubiana3 yıl önce

Holly crap this this soooooo nice ☺️

Brady Johnston profil fotoğrafı
Brady Johnston3 yıl önce

I was pretty stoked with results it works pretty well

Benzer Videolar

After trying on and off for almost a year, I have FINALLY got secondary structure cartoons for proteins working inside of #blender3d and #GeometryNodes. Need to test on beta-sheets, then it should make its way to #MolecularNodes pretty soon!
0:21

After trying on and off for almost a year, I have FINALLY got secondary structure cartoons for proteins working inside of #blender3d and #GeometryNodes. Need to test on beta-sheets, then it should make its way to #MolecularNodes pretty soon!

Brady Johnston

34,086 görüntüleme • 3 yıl önce

Thanks to contributors on the GitHub, #MolecularNodes can now import .star files from RELION and cisTEM. You can take your EM images and instance proteins all across the scene, all inside of #Blender3d and #GeometryNodes Contributed by Johannes Elferich (
0:20

Thanks to contributors on the GitHub, #MolecularNodes can now import .star files from RELION and cisTEM. You can take your EM images and instance proteins all across the scene, all inside of #Blender3d and #GeometryNodes Contributed by Johannes Elferich (

Brady Johnston

55,002 görüntüleme • 3 yıl önce

.Mārtiņš Upītis 🇱🇻 🇺🇦 showcased a realistic-looking water and water ripples simulation created using Blender 3.6's Simulation Nodes. More demos and info: #blender #blender3d #b3d #blendercommunity #techart #technicalart #simulationnodes #geometrynodes
0:28

.Mārtiņš Upītis 🇱🇻 🇺🇦 showcased a realistic-looking water and water ripples simulation created using Blender 3.6's Simulation Nodes. More demos and info: #blender #blender3d #b3d #blendercommunity #techart #technicalart #simulationnodes #geometrynodes

80 LEVEL

165,018 görüntüleme • 3 yıl önce

You can simulate a button being pressed down in geometry nodes by using the 'Geometry Proximity' node. This makes animations easier to do, no need for keyframes. #b3d #geometrynodes #simulationnodes #blender3d #electronics #engineering #hardware #Calculus #Physics #educational #Science
0:22

You can simulate a button being pressed down in geometry nodes by using the 'Geometry Proximity' node. This makes animations easier to do, no need for keyframes. #b3d #geometrynodes #simulationnodes #blender3d #electronics #engineering #hardware #Calculus #Physics #educational #Science

Sam M

48,331 görüntüleme • 2 yıl önce

Secondary Structure cartoons are now part of #MolecularNodes ! v2.6.0: Every aspect of these are customisable. Width, thickness, colour, arrows / no arrows, cylinders. In love with the final result. Done entirely within #GeometryNodes and #Blender3d
0:41

Secondary Structure cartoons are now part of #MolecularNodes ! v2.6.0: Every aspect of these are customisable. Width, thickness, colour, arrows / no arrows, cylinders. In love with the final result. Done entirely within #GeometryNodes and #Blender3d

Brady Johnston

71,167 görüntüleme • 3 yıl önce

Geometry nodes mesh contour lines without using mesh boolean, and with good performance #b3d #geometrynodes #blender3d
0:47

Geometry nodes mesh contour lines without using mesh boolean, and with good performance #b3d #geometrynodes #blender3d

higgsas

71,810 görüntüleme • 2 yıl önce

Generating a spaghetti using geometry nodes. #b3d #geometrynodes #blender3d
0:35

Generating a spaghetti using geometry nodes. #b3d #geometrynodes #blender3d

Shahzod Boyhonov

369,152 görüntüleme • 2 yıl önce

I’ve created procedural generators of ICs and connectors using geometry nodes. Due to the large number of different packages of ICs and connectors, it might be better to generate their models as and when needed rather than storing an unlimited number of unique 3D models. Also using the new hobby mat material from Chipp Walters #b3d #geometrynodes #blender3d #electronics #engineering #science #kicad #circuits #pcbdesign #manufacturing #technology #3dmodeling
1:12

I’ve created procedural generators of ICs and connectors using geometry nodes. Due to the large number of different packages of ICs and connectors, it might be better to generate their models as and when needed rather than storing an unlimited number of unique 3D models. Also using the new hobby mat material from Chipp Walters #b3d #geometrynodes #blender3d #electronics #engineering #science #kicad #circuits #pcbdesign #manufacturing #technology #3dmodeling

Sam M

50,715 görüntüleme • 1 yıl önce

Sharing some results of my water solver. Geometry nodes, Blender 3.6. #blender3d #b3d #geometrynodes
1:25

Sharing some results of my water solver. Geometry nodes, Blender 3.6. #blender3d #b3d #geometrynodes

Shahzod Boyhonov

400,331 görüntüleme • 2 yıl önce

This is Info Graphs for Blender (using Geometry nodes) Visit the product page for a free demo: #blender3d #blender #b3d #Geometrynodes
0:37

This is Info Graphs for Blender (using Geometry nodes) Visit the product page for a free demo: #blender3d #blender #b3d #Geometrynodes

Meme.blend

39,336 görüntüleme • 1 yıl önce

I recreated the Fortnite Rift in Blender using Geometry Nodes! Cycles and Eevee!✨ It’s fully customizable and easy to use. 🤌🏻 Enjoy the .blend file: #Fortnite #Blender3D #b3d #GeometryNodes
2:15

I recreated the Fortnite Rift in Blender using Geometry Nodes! Cycles and Eevee!✨ It’s fully customizable and easy to use. 🤌🏻 Enjoy the .blend file: #Fortnite #Blender3D #b3d #GeometryNodes

ThisIsMe • 3D Art

11,184 görüntüleme • 19 gün önce

Technique for creating 2d voronoi using Fill Curve for delaunay triangulation and Dual Mesh #b3d #blender3d #blender #geometrynodes
0:21

Technique for creating 2d voronoi using Fill Curve for delaunay triangulation and Dual Mesh #b3d #blender3d #blender #geometrynodes

higgsas

19,812 görüntüleme • 2 yıl önce

Designing MRI coils using ElectroMag Nodes! You can visualise the magnetic field lines generated by the superconducting electromagnets in MRI machines and see how making adjustments to them impacts the strength and shape of the field lines, and especially the straightness of lines in the centre In am using the new gizmos in geometry nodes to quickly add and adjust coils. Next I will be also adding the gradient coils. #b3d #geometrynodes #blender3d #mri #art #science #physics #electronics #engineering #simulation #render
1:13

Designing MRI coils using ElectroMag Nodes! You can visualise the magnetic field lines generated by the superconducting electromagnets in MRI machines and see how making adjustments to them impacts the strength and shape of the field lines, and especially the straightness of lines in the centre In am using the new gizmos in geometry nodes to quickly add and adjust coils. Next I will be also adding the gradient coils. #b3d #geometrynodes #blender3d #mri #art #science #physics #electronics #engineering #simulation #render

Sam M

18,464 görüntüleme • 1 yıl önce

#geometrynodes #simulationnodes , made some adjustments and mixed the earlier version with Seanterelle´s amazing 2D fluid sim thingie, check his youtube for that(link below)! #b3d
0:20

#geometrynodes #simulationnodes , made some adjustments and mixed the earlier version with Seanterelle´s amazing 2D fluid sim thingie, check his youtube for that(link below)! #b3d

Miettinen Jesse - Blenderesse

275,813 görüntüleme • 2 yıl önce

Subagents running locally and simultaneously on MacBook Pro M5 with Codex CLI + LM Studio to review code and find bugs using Qwen 3.6 Powered by the updated MLX engine with batching in beta in the app The batching speed boost is noticeable
1:40

Subagents running locally and simultaneously on MacBook Pro M5 with Codex CLI + LM Studio to review code and find bugs using Qwen 3.6 Powered by the updated MLX engine with batching in beta in the app The batching speed boost is noticeable

Adrien Grondin

72,719 görüntüleme • 21 gün önce

Mayne shows his approach to using trendlines in trending conditions. "When the most vertical of the trendlines breaks, that might be a sign that the aggressive buying is fading." Mayne
0:29

Mayne shows his approach to using trendlines in trending conditions. "When the most vertical of the trendlines breaks, that might be a sign that the aggressive buying is fading." Mayne

RC Markets

11,373 görüntüleme • 6 ay önce

Long in the making, but happy to present the Chlamydomonas chlororibosome! Cryo-ET🔬reveals a new domain on the small subunit, made by multiple extensions in conserved ribosomal proteins. Chlororibosomes might be more diverse than expected! bioRxiv 📖:
0:44

Long in the making, but happy to present the Chlamydomonas chlororibosome! Cryo-ET🔬reveals a new domain on the small subunit, made by multiple extensions in conserved ribosomal proteins. Chlororibosomes might be more diverse than expected! bioRxiv 📖:

Florent Waltz

11,876 görüntüleme • 4 ay önce

No audio, but the text transcription from the MD-11 crash synced to the reconstruction using the data recorder.
0:31

No audio, but the text transcription from the MD-11 crash synced to the reconstruction using the data recorder.

Scott Manley

966,886 görüntüleme • 21 gün önce

My recent #deltarune model motivated me to implement a new feature for my upcoming Freeform-Facial-Feature tool Using #Blender 4.5 beta and it's manifold boolean The transparency mask should be a lot more reliable with sharp corners and hard surfaces now! #b3d #geometrynodes
0:50

My recent #deltarune model motivated me to implement a new feature for my upcoming Freeform-Facial-Feature tool Using #Blender 4.5 beta and it's manifold boolean The transparency mask should be a lot more reliable with sharp corners and hard surfaces now! #b3d #geometrynodes

Krysidian

76,905 görüntüleme • 11 ay önce

This is how DNA turns coded information into functional proteins - the building blocks of the nanomachines that keep the cells in your body alive. This complex process highlights the sophisticated interconnected systems of Life which must all exist together from the beginning, or Life doesn't happen. First, an RNA molecule is copied from a short segment of DNA. Without the specifically ordered DNA information, RNA cannot form, proteins cannot be built, cells stop working, and life ceases to exist. Life is information first. Once the RNA Molecule is created, it gets ejected from the Polymerase where it was built, and it travels through a complex molecular machine called a Nuclear Pore Complex (NPC), which is an information recognition device that controls the flow of information in and out of a cell's nucleus. The NPC is highly complex - composed of about 500-1,000 protein subunits, derived from a set of about 35 distinct proteins. Without this molecular machine, there is no regulation for what goes in and out of the cell's nucleus, which would lead to catastrophic death for the cell. It must exist for cells to exist. Once the RNA Molecule passes through the NPC, it travels to the Ribosome, a 2-part chemical factory which reads the information on RNA and uses it to construct functional proteins using a specifically sequenced chain of amino acids. Once complete, this protein will then be sent to the section of the cell it belongs to integrate into another molecular machine and do its job. The Ribosome is another highly complex molecular machine - consisting of between 56-80 proteins. Without this molecular machines, proteins cannot be built. Proteins are the building blocks of every cell in every organism on Earth. Without Ribosomes, Life doesn't exist. If you're paying attention, you'll start to realize that Life relies on a highly sophisticated interdependent network of complex machines, which all rely on each other for the function of the system. DNA requires the cell for stability, but the cell requires the proteins for its structure and function, but those proteins require DNA and RNA to be built - it's a circle of necessary interdependence. Systems like this cannot be built by evolutionary processes, which requires that each piece of the process is built by gradual incremental means over lots of time. Without all the pieces there, from the beginning, none of it works. There is only one known source of complex & interdependent informational systems like those we find in life: and that is from Intelligence. Molecular Biology is the best and most obvious evidence of the Intelligent Design in Life.
0:55

This is how DNA turns coded information into functional proteins - the building blocks of the nanomachines that keep the cells in your body alive. This complex process highlights the sophisticated interconnected systems of Life which must all exist together from the beginning, or Life doesn't happen. First, an RNA molecule is copied from a short segment of DNA. Without the specifically ordered DNA information, RNA cannot form, proteins cannot be built, cells stop working, and life ceases to exist. Life is information first. Once the RNA Molecule is created, it gets ejected from the Polymerase where it was built, and it travels through a complex molecular machine called a Nuclear Pore Complex (NPC), which is an information recognition device that controls the flow of information in and out of a cell's nucleus. The NPC is highly complex - composed of about 500-1,000 protein subunits, derived from a set of about 35 distinct proteins. Without this molecular machine, there is no regulation for what goes in and out of the cell's nucleus, which would lead to catastrophic death for the cell. It must exist for cells to exist. Once the RNA Molecule passes through the NPC, it travels to the Ribosome, a 2-part chemical factory which reads the information on RNA and uses it to construct functional proteins using a specifically sequenced chain of amino acids. Once complete, this protein will then be sent to the section of the cell it belongs to integrate into another molecular machine and do its job. The Ribosome is another highly complex molecular machine - consisting of between 56-80 proteins. Without this molecular machines, proteins cannot be built. Proteins are the building blocks of every cell in every organism on Earth. Without Ribosomes, Life doesn't exist. If you're paying attention, you'll start to realize that Life relies on a highly sophisticated interdependent network of complex machines, which all rely on each other for the function of the system. DNA requires the cell for stability, but the cell requires the proteins for its structure and function, but those proteins require DNA and RNA to be built - it's a circle of necessary interdependence. Systems like this cannot be built by evolutionary processes, which requires that each piece of the process is built by gradual incremental means over lots of time. Without all the pieces there, from the beginning, none of it works. There is only one known source of complex & interdependent informational systems like those we find in life: and that is from Intelligence. Molecular Biology is the best and most obvious evidence of the Intelligent Design in Life.

Divinely Designed

62,470 görüntüleme • 5 ay önce